There is no way to remove those from the TEXT version of the merchant email receipt, but if you enable the merchant receipt in HTML format (see Commerce Setup -> Order System -> Email), then it is a different story because the look of this email is template-driven. The backoffice link and the 'this store powered by' line aren't even in the HTML version by default, and the 'Order Processing Info' line can be removed by removing the line similar to the following from the [-- DEFINE ThankYou_Email --] section of your shopping cart template (note that most ShopSite default templates actually include an Include file 'MerchantEmail.sst' in this DEFINE, so that is where this code is by default):
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<tr><td align="left">[-- Store.OrderInfo --]:<br>[-- SC_PAY_INFO --]</td></tr>
-Loren